Here is a list of all documented files with brief descriptions:
| jade.agi_controller.hpp | |
| jade.agi_reader.hpp | |
| jade.args.hpp | |
| jade.assert.hpp | |
| jade.bgl2lgm.hpp | |
| jade.bgl_reader.hpp | |
| jade.blas.hpp | |
| jade.controller.hpp | |
| jade.controller_factory.hpp | |
| jade.cov2nwk.hpp | |
| jade.discrete_genotype_matrix.hpp | |
| jade.error.hpp | |
| cpax/jade.forced_grouping.hpp | |
| qpas/jade.forced_grouping.hpp | |
| jade.genotype.hpp | |
| jade.genotype_matrix.hpp | |
| jade.genotype_matrix_factory.hpp | |
| cpax/jade.improver.hpp | |
| qpas/jade.improver.hpp | |
| jade.lapack.hpp | |
| jade.lemke.hpp | |
| jade.likelihood.hpp | |
| jade.likelihood_genotype_matrix.hpp | |
| convert/jade.main.cpp | |
| cpax/jade.main.cpp | |
| filter/jade.main.cpp | |
| nemeco/jade.main.cpp | |
| neoscan/jade.main.cpp | |
| qpas/jade.main.cpp | |
| selscan/jade.main.cpp | |
| jade.matrix.hpp | |
| jade.neighbor_joining.hpp | |
| jade.neoscan.hpp | |
| jade.newick.hpp | |
| jade.nwk2cov.hpp | |
| jade.nwk2svg.hpp | |
| cpax/jade.optimizer.hpp | |
| nemeco/jade.optimizer.hpp | |
| qpas/jade.optimizer.hpp | |
| cpax/jade.options.hpp | |
| nemeco/jade.options.hpp | |
| qpas/jade.options.hpp | |
| jade.ped2dgm.hpp | |
| jade.ped_reader.hpp | |
| jade.qpas.hpp | |
| jade.randomizer.hpp | |
| jade.rema.hpp | |
| jade.rerooted_tree.hpp | |
| jade.scanner.hpp | |
| jade.selscan.hpp | |
| cpax/jade.settings.hpp | |
| nemeco/jade.settings.hpp | |
| qpas/jade.settings.hpp | |
| jade.shunting_yard.hpp | |
| jade.simplex.hpp | |
| jade.stopwatch.hpp | |
| jade.svg_tree.hpp | |
| jade.system.hpp | |
| jade.tree_controller.hpp | |
| jade.tree_path.hpp | |
| jade.treeless_controller.hpp | |
| jade.vec2.hpp | |
| jade.verification.hpp | |
| jade.version.hpp | |
