ĽOhana
A suite of software for analyzing population structure and admixture history using unsupervised learning methods.
File List
Here is a list of all documented files with brief descriptions:
 jade.agi_controller.hpp
 jade.agi_reader.hpp
 jade.args.hpp
 jade.assert.hpp
 jade.bgl2lgm.hpp
 jade.bgl_reader.hpp
 jade.controller.hpp
 jade.controller_factory.hpp
 jade.cov2nwk.hpp
 jade.discrete_genotype_matrix.hpp
 jade.error.hpp
 cpax/jade.forced_grouping.hpp
 qpas/jade.forced_grouping.hpp
 jade.genotype.hpp
 jade.genotype_matrix.hpp
 jade.genotype_matrix_factory.hpp
 cpax/jade.improver.hpp
 qpas/jade.improver.hpp
 jade.lemke.hpp
 jade.likelihood.hpp
 jade.likelihood_genotype_matrix.hpp
 convert/jade.main.cpp
 cpax/jade.main.cpp
 filter/jade.main.cpp
 nemeco/jade.main.cpp
 neoscan/jade.main.cpp
 qpas/jade.main.cpp
 selscan/jade.main.cpp
 jade.matrix.hpp
 jade.neighbor_joining.hpp
 jade.neoscan.hpp
 jade.newick.hpp
 jade.nwk2cov.hpp
 jade.nwk2svg.hpp
 jade.openblas.hpp
 cpax/jade.optimizer.hpp
 nemeco/jade.optimizer.hpp
 qpas/jade.optimizer.hpp
 cpax/jade.options.hpp
 nemeco/jade.options.hpp
 qpas/jade.options.hpp
 jade.ped2dgm.hpp
 jade.ped_reader.hpp
 jade.qpas.hpp
 jade.randomizer.hpp
 jade.rema.hpp
 jade.rerooted_tree.hpp
 jade.scanner.hpp
 jade.selscan.hpp
 cpax/jade.settings.hpp
 nemeco/jade.settings.hpp
 qpas/jade.settings.hpp
 jade.shunting_yard.hpp
 jade.simplex.hpp
 jade.stopwatch.hpp
 jade.svg_tree.hpp
 jade.system.hpp
 jade.tree_controller.hpp
 jade.tree_path.hpp
 jade.treeless_controller.hpp
 jade.vec2.hpp
 jade.verification.hpp
 jade.version.hpp