Aarhus University

General Information

Email:Jade Cheng 成玉 <jade.cheng@cs.au.dk>
Curriculum Vitae:jade-cheng-cv.pdf
Website:www.jade-cheng.com
PhD thesis:Learning with Admixture: Modeling, Optimization, and Applications
PhD defense:Predicting evolution using modeling and optimization

Hvorkommerdufra

23andme-to-plink

23andme-api-authentication

Tools and technologies

A study of Danish population's genetic history

2014 Computer science day

2014 Hvorkommerdufra conference

Coalescent Hidden Markov Model

Heuristic based numerical optimization

Continuous-time Markov chain

Admixture CoalHMM

2014 MADALGO, Aarhus

2015 Asia Pacific Bioinformatics, HsinChu Taiwan

2015 Center for Theoretical Evolutionary Genomics, UC Berkeley

2015 Probabilistic Modeling in Genomics, Cold Spring Harbor Laboratory New York

2015 Qualification Report and Presentation

Admixture, Covariances, and Selection

Overview

Admixture

Population variances and covariances

Selection

Software

‘Ohana, a suite of software to infer population structure, admixture, and selection

nemetree, an interactive visualization for phylogenetic trees

nemepos, an interactive visualization for partially ordered sets

Jocx, admixture coalescence hidden Markov modeling and optimizations